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J Am Med Inform Assoc 14:355-360 doi:10.1197/jamia.M2321
  • Original Investigation

NeuroExtract: Facilitating Neuroscience-oriented Retrieval from Broadly-focused Bioscience Databases Using Text-based Query Mediation

Table 1

The Number of Entries Retrieved from the Three Databases Using Different Search Terms

Search Terms PDB SWISSPROT GEO
Broad search
brain or “central nervous system” 418 33781 489
Focused searches
“spinal cord” 2/0 12/0 99/54
cerebellum 24/0 3/0 84/65
neuron 393/62 109/25 144/62
axons 13/3 8/0 70/18
hormones 76/0 11/9 15/14
glia 71/1 12/0 27/13
neurotransmission 15/0 123/10 19/12
synapse 29/0 135/8 13/3
forebrain 0/0 8/0 35/26
mesencephalon 2/0 0/0 16/10
myelencephalon 2/0 2/0 21/14
dopaminergic 0/0 67/1 0/0
“olfactory receptor” 2/0 488/0 2/1
motor 24/0 5/4 44/25
photoreceptor 0/0 0/0 40/24
granule cell 0/0 0/0 14/11
purkinje 0/0 0/0 10/4
other (54 more keywords) 51/0 45/12 485/215
  • The numbers after the slash indicate how many of the entries retrieved for each focused search were also retrieved by the broad search (brain or “central nervous system”).

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