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July 2013, Volume 20, Issue 4

[Author index]

Cover
  1. Highlights
  2. Focus on translational bioinformatics
  3. Focus on human factors and system utilization
  4. Correction
  5. Messages from AMIA
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View multiple abstracts by picking relevant boxes and click Get all checked abstracts

Issue information

[Front cover][Table of contents PDF][Editorial board PDF]

Highlights

  • Making it personal: translational bioinformatics

    • Atul J Butte,
    • Lucila Ohno-Machado
    J Am Med Inform Assoc 2013;20:4 595-596 doi:10.1136/amiajnl-2013-002028

Focus on translational bioinformatics

  • Research and applications: Comparison and validation of genomic predictors for anticancer drug sensitivity

    • Simon Papillon-Cavanagh,
    • Nicolas De Jay,
    • Nehme Hachem,
    • Catharina Olsen,
    • Gianluca Bontempi,
    • Hugo J W L Aerts,
    • John Quackenbush,
    • Benjamin Haibe-Kains
    J Am Med Inform Assoc 2013;20:4 597-602 Published Online First: 26 January 2013 doi:10.1136/amiajnl-2012-001442
    Editor's Choice

  • Research and applications: Role of genetic heterogeneity and epistasis in bladder cancer susceptibility and outcome: a learning classifier system approach

    • Ryan John Urbanowicz,
    • Angeline S Andrew,
    • Margaret Rita Karagas,
    • Jason H Moore
    J Am Med Inform Assoc 2013;20:4 603-612 Published Online First: 26 February 2013 doi:10.1136/amiajnl-2012-001574
    Open Access

  • Research and applications: Breast cancer survivability prediction using labeled, unlabeled, and pseudo-labeled patient data

    • Juhyeon Kim,
    • Hyunjung Shin
    J Am Med Inform Assoc 2013;20:4 613-618 Published Online First: 6 March 2013 doi:10.1136/amiajnl-2012-001570

  • Research and applications: Network models of genome-wide association studies uncover the topological centrality of protein interactions in complex diseases

    • Younghee Lee,
    • Haiquan Li,
    • Jianrong Li,
    • Ellen Rebman,
    • Ikbel Achour,
    • Kelly E Regan,
    • Eric R Gamazon,
    • James L Chen,
    • Xinan Holly Yang,
    • Nancy J Cox,
    • Yves A Lussier
    J Am Med Inform Assoc 2013;20:4 619-629 Published Online First: 25 January 2013 doi:10.1136/amiajnl-2012-001519
    Open Access

  • Research and applications: An information-gain approach to detecting three-way epistatic interactions in genetic association studies

    • Ting Hu,
    • Yuanzhu Chen,
    • Jeff W Kiralis,
    • Ryan L Collins,
    • Christian Wejse,
    • Giorgio Sirugo,
    • Scott M Williams,
    • Jason H Moore
    J Am Med Inform Assoc 2013;20:4 630-636 Published Online First: 8 February 2013 doi:10.1136/amiajnl-2012-001525
    Open Access

  • Research and applications: Extracting coordinated patterns of DNA methylation and gene expression in ovarian cancer

    • Je-Gun Joung,
    • Dokyoon Kim,
    • Kyung Hwa Kim,
    • Ju Han Kim
    J Am Med Inform Assoc 2013;20:4 637-642 Published Online First: 18 April 2013 doi:10.1136/amiajnl-2012-001571

  • Research and applications: A rational free energy-based approach to understanding and targeting disease-causing missense mutations

    • Zhe Zhang,
    • Shawn Witham,
    • Marharita Petukh,
    • Gautier Moroy,
    • Maria Miteva,
    • Yoshihiko Ikeguchi,
    • Emil Alexov
    J Am Med Inform Assoc 2013;20:4 643-651 Published Online First: 13 February 2013 doi:10.1136/amiajnl-2012-001505

  • Research and applications: ICD-9 tobacco use codes are effective identifiers of smoking status

    • Laura K Wiley,
    • Anushi Shah,
    • Hua Xu,
    • William S Bush
    J Am Med Inform Assoc 2013;20:4 652-658 Published Online First: 9 February 2013 doi:10.1136/amiajnl-2012-001557

  • Research and applications: An integrated approach to identify causal network modules of complex diseases with application to colorectal cancer

    • Zhenshu Wen,
    • Zhi-Ping Liu,
    • Zhengrong Liu,
    • Yan Zhang,
    • Luonan Chen
    J Am Med Inform Assoc 2013;20:4 659-667 Published Online First: 11 September 2012 doi:10.1136/amiajnl-2012-001168

  • Research and applications: Leveraging biodiversity knowledge for potential phyto-therapeutic applications

    • Vivekanand Sharma,
    • Indra Neil Sarkar
    J Am Med Inform Assoc 2013;20:4 668-679 Published Online First: 21 March 2013 doi:10.1136/amiajnl-2012-001445

  • Research and applications: Identifying survival associated morphological features of triple negative breast cancer using multiple datasets

    • Chao Wang,
    • Thierry Pécot,
    • Debra L Zynger,
    • Raghu Machiraju,
    • Charles L Shapiro,
    • Kun Huang
    J Am Med Inform Assoc 2013;20:4 680-687 Published Online First: 12 April 2013 doi:10.1136/amiajnl-2012-001538
    Open Access

  • Research and applications: Machine learning for predicting the response of breast cancer to neoadjuvant chemotherapy

    • Subramani Mani,
    • Yukun Chen,
    • Xia Li,
    • Lori Arlinghaus,
    • A Bapsi Chakravarthy,
    • Vandana Abramson,
    • Sandeep R Bhave,
    • Mia A Levy,
    • Hua Xu,
    • Thomas E Yankeelov
    J Am Med Inform Assoc 2013;20:4 688-695 Published Online First: 24 April 2013 doi:10.1136/amiajnl-2012-001332

  • Brief communication: External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma

    • Jeremy L Warner,
    • Gil Alterovitz,
    • Kelly Bodio,
    • Robin M Joyce
    J Am Med Inform Assoc 2013;20:4 696-699 Published Online First: 20 March 2013 doi:10.1136/amiajnl-2012-001355
    Editor's Choice

Focus on human factors and system utilization

  • Perspective: Electronic medical records and the transgender patient: recommendations from the World Professional Association for Transgender Health EMR Working Group

    • Madeline B Deutsch,
    • Jamison Green,
    • JoAnne Keatley,
    • Gal Mayer,
    • Jennifer Hastings,
    • Alexandra M Hall
    J Am Med Inform Assoc 2013;20:4 700-703 Published Online First: 30 April 2013 doi:10.1136/amiajnl-2012-001472

  • Perspective: Privacy policies for health social networking sites

    • Jingquan Li
    J Am Med Inform Assoc 2013;20:4 704-707 Published Online First: 18 April 2013 doi:10.1136/amiajnl-2012-001500
    Open Access

  • Research and applications: The discriminatory cost of ICD-10-CM transition between clinical specialties: metrics, case study, and mitigating tools

    • Andrew D Boyd,
    • Jianrong ‘John’ Li,
    • Mike D Burton,
    • Michael Jonen,
    • Vincent Gardeux,
    • Ikbel Achour,
    • Roger Q Luo,
    • Ilir Zenku,
    • Neil Bahroos,
    • Stephen B Brown,
    • Terry Vanden Hoek,
    • Yves A Lussier
    J Am Med Inform Assoc 2013;20:4 708-717 Published Online First: 5 May 2013 doi:10.1136/amiajnl-2012-001358
    Open Access

  • Research and applications: Computerized provider documentation: findings and implications of a multisite study of clinicians and administrators

    • Peter J Embi,
    • Charlene Weir,
    • Efthimis N Efthimiadis,
    • Stephen M Thielke,
    • Ashley N Hedeen,
    • Kenric W Hammond
    J Am Med Inform Assoc 2013;20:4 718-726 Published Online First: 25 January 2013 doi:10.1136/amiajnl-2012-000946
    Open Access

  • Research and applications: Primary care practitioners’ views on test result management in EHR-enabled health systems: a national survey

    • Hardeep Singh,
    • Christiane Spitzmueller,
    • Nancy J Petersen,
    • Mona K Sawhney,
    • Michael W Smith,
    • Daniel R Murphy,
    • Donna Espadas,
    • Archana Laxmisan,
    • Dean F Sittig
    J Am Med Inform Assoc 2013;20:4 727-735 Published Online First: 25 December 2012 doi:10.1136/amiajnl-2012-001267
    Open Access

  • Research and applications: Resident physicians as human information systems: sources yet seekers

    • Ellen J Bass,
    • Justin Michael DeVoge,
    • Linda A Waggoner-Fountain,
    • Stephen M Borowitz
    J Am Med Inform Assoc 2013;20:4 736-742 Published Online First: 25 December 2012 doi:10.1136/amiajnl-2012-001112
    Open Access

  • Research and applications: Modeling return on investment for an electronic medical record system in Lilongwe, Malawi

    • Julia Driessen,
    • Marco Cioffi,
    • Noor Alide,
    • Zach Landis-Lewis,
    • Gervase Gamadzi,
    • Oliver Jintha Gadabu,
    • Gerald Douglas
    J Am Med Inform Assoc 2013;20:4 743-748 Published Online First: 9 November 2012 doi:10.1136/amiajnl-2012-001242
    Open Access

  • Research and applications: Formative evaluation of the accuracy of a clinical decision support system for cervical cancer screening

    • Kavishwar Balwant Wagholikar,
    • Kathy L MacLaughlin,
    • Thomas M Kastner,
    • Petra M Casey,
    • Michael Henry,
    • Robert A Greenes,
    • Hongfang Liu,
    • Rajeev Chaudhry
    J Am Med Inform Assoc 2013;20:4 749-757 Published Online First: 5 April 2013 doi:10.1136/amiajnl-2013-001613
    Open Access

  • Research and applications: A question of trust: user-centered design requirements for an informatics intervention to promote the sexual health of African-American youth

    • Tiffany C Veinot,
    • Terrance R Campbell,
    • Daniel J Kruger,
    • Alison Grodzinski
    J Am Med Inform Assoc 2013;20:4 758-765 Published Online First: 19 March 2013 doi:10.1136/amiajnl-2012-001361

  • Research and applications: The intended and unintended consequences of communication systems on general internal medicine inpatient care delivery: a prospective observational case study of five teaching hospitals

    • Robert C Wu,
    • Vivian Lo,
    • Dante Morra,
    • Brian M Wong,
    • Robert Sargeant,
    • Ken Locke,
    • Rodrigo Cavalcanti,
    • Sherman D Quan,
    • Peter Rossos,
    • Kim Tran,
    • Mark Cheung
    J Am Med Inform Assoc 2013;20:4 766-777 Published Online First: 25 January 2013 doi:10.1136/amiajnl-2012-001160

  • Research and applications: Predicting complications of percutaneous coronary intervention using a novel support vector method

    • Gyemin Lee,
    • Hitinder S Gurm,
    • Zeeshan Syed
    J Am Med Inform Assoc 2013;20:4 778-786 Published Online First: 18 April 2013 doi:10.1136/amiajnl-2012-001588

  • Brief communication: Facility characteristics associated with the use of electronic health records in residential care facilities

    • Amanda A Holup,
    • Debra Dobbs,
    • Hongdao Meng,
    • Kathryn Hyer
    J Am Med Inform Assoc 2013;20:4 787-791 Published Online First: 3 May 2013 doi:10.1136/amiajnl-2012-001564

  • Review: Measuring value for money: a scoping review on economic evaluation of health information systems

    • Jesdeep Bassi,
    • Francis Lau
    J Am Med Inform Assoc 2013;20:4 792-801 Published Online First: 15 February 2013 doi:10.1136/amiajnl-2012-001422
    Open Access

Correction

  • Correction

    J Am Med Inform Assoc 2013;20:4 801 doi:10.1136/amiajnl-2013-M1135corr1

Messages from AMIA

  • President's column: population health—the ultimate application of informatics!

    • Kevin M Fickenscher
    J Am Med Inform Assoc 2013;20:4 803-804 doi:10.1136/amiajnl-2013-001976

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