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September 2010, Volume 17, Issue 5

[Author index]

Cover
  1. Perspectives on informatics
  2. The practice of informatics
  3. Focus on i2b2 NLP extraction of medication information
  4. Original investigations
  5. PostScript
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Issue information

[Front cover][Table of contents PDF][Editorial board PDF]

Perspectives on informatics

  • Clinical decision support: progress and opportunities

    • Jason A Lyman,
    • Wendy F Cohn,
    • Meryl Bloomrosen,
    • Don E Detmer
    JAMIA 2010;17:487-492 doi:10.1136/jamia.2010.005561

The practice of informatics

  • A review of human factors principles for the design and implementation of medication safety alerts in clinical information systems

    • Shobha Phansalkar,
    • Judy Edworthy,
    • Elizabeth Hellier,
    • Diane L Seger,
    • Angela Schedlbauer,
    • Anthony J Avery,
    • David W Bates
    JAMIA 2010;17:493-501 doi:10.1136/jamia.2010.005264
    Editor's Choice

  • Implementing practice-linked pre-visit electronic journals in primary care: patient and physician use and satisfaction

    • Jonathan S Wald,
    • Alexandra Businger,
    • Tejal K Gandhi,
    • Richard W Grant,
    • Eric G Poon,
    • Jeffrey L Schnipper,
    • Lynn A Volk,
    • Blackford Middleton
    JAMIA 2010;17:502-506 doi:10.1136/jamia.2009.001362

  • Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications

    • Guergana K Savova,
    • James J Masanz,
    • Philip V Ogren,
    • Jiaping Zheng,
    • Sunghwan Sohn,
    • Karin C Kipper-Schuler,
    • Christopher G Chute
    JAMIA 2010;17:507-513 doi:10.1136/jamia.2009.001560

Focus on i2b2 NLP extraction of medication information

  • Extracting medication information from clinical text

    • Özlem Uzuner,
    • Imre Solti,
    • Eithon Cadag
    JAMIA 2010;17:514-518 doi:10.1136/jamia.2010.003947
    Editor's Choice

  • Community annotation experiment for ground truth generation for the i2b2 medication challenge

    • Özlem Uzuner,
    • Imre Solti,
    • Fei Xia,
    • Eithon Cadag
    JAMIA 2010;17:519-523 doi:10.1136/jamia.2010.004200

  • High accuracy information extraction of medication information from clinical notes: 2009 i2b2 medication extraction challenge

    • Jon Patrick,
    • Min Li
    JAMIA 2010;17:524-527 doi:10.1136/jamia.2010.003939

  • Integrating existing natural language processing tools for medication extraction from discharge summaries

    • Son Doan,
    • Lisa Bastarache,
    • Sergio Klimkowski,
    • Joshua C Denny,
    • Hua Xu
    JAMIA 2010;17:528-531 doi:10.1136/jamia.2010.003855

  • Medication information extraction with linguistic pattern matching and semantic rules

    • Irena Spasić,
    • Farzaneh Sarafraz,
    • John A Keane,
    • Goran Nenadić
    JAMIA 2010;17:532-535 doi:10.1136/jamia.2010.003657

  • Extracting Rx information from clinical narrative

    • James G Mork,
    • Olivier Bodenreider,
    • Dina Demner-Fushman,
    • Rezarta Islamaj Doğan,
    • François-Michel Lang,
    • Zhiyong Lu,
    • Aurélie Névéol,
    • Lee Peters,
    • Sonya E Shooshan,
    • Alan R Aronson
    JAMIA 2010;17:536-539 doi:10.1136/jamia.2010.003970

  • Improving textual medication extraction using combined conditional random fields and rule-based systems

    • Domonkos Tikk,
    • Illés Solt
    JAMIA 2010;17:540-544 doi:10.1136/jamia.2010.004119

  • Automatic extraction of medication information from medical discharge summaries

    • Hui Yang
    JAMIA 2010;17:545-548 doi:10.1136/jamia.2010.003863

  • Linguistic approach for identification of medication names and related information in clinical narratives

    • Thierry Hamon,
    • Natalia Grabar
    JAMIA 2010;17:549-554 doi:10.1136/jamia.2010.004036

  • Extracting medical information from narrative patient records: the case of medication-related information

    • Louise Deléger,
    • Cyril Grouin,
    • Pierre Zweigenbaum
    JAMIA 2010;17:555-558 doi:10.1136/jamia.2010.003962

  • Textractor: a hybrid system for medications and reason for their prescription extraction from clinical text documents

    • Stéphane M Meystre,
    • Julien Thibault,
    • Shuying Shen,
    • John F Hurdle,
    • Brett R South
    JAMIA 2010;17:559-562 doi:10.1136/jamia.2010.004028

  • Lancet: a high precision medication event extraction system for clinical text

    • Zuofeng Li,
    • Feifan Liu,
    • Lamont Antieau,
    • Yonggang Cao,
    • Hong Yu
    JAMIA 2010;17:563-567 doi:10.1136/jamia.2010.004077

Original investigations

  • Leveraging informatics for genetic studies: use of the electronic medical record to enable a genome-wide association study of peripheral arterial disease

    • Iftikhar J Kullo,
    • Jin Fan,
    • Jyotishman Pathak,
    • Guergana K Savova,
    • Zeenat Ali,
    • Christopher G Chute
    JAMIA 2010;17:568-574 doi:10.1136/jamia.2010.004366

  • Errors and electronic prescribing: a controlled laboratory study to examine task complexity and interruption effects

    • Farah Magrabi,
    • Simon Y W Li,
    • Richard O Day,
    • Enrico Coiera
    JAMIA 2010;17:575-583 doi:10.1136/jamia.2009.001719

  • A network collaboration implementing technology to improve medication dispensing and administration in critical access hospitals

    • Douglas S Wakefield,
    • Marcia M Ward,
    • Jean L Loes,
    • John O'Brien
    JAMIA 2010;17:584-587 doi:10.1136/jamia.2010.004267

  • Under-documentation of chronic kidney disease in the electronic health record in outpatients

    • Herbert S Chase,
    • Jai Radhakrishnan,
    • Shayan Shirazian,
    • Maya K Rao,
    • David K Vawdrey
    JAMIA 2010;17:588-594 doi:10.1136/jamia.2009.001396

  • Developing syndrome definitions based on consensus and current use

    • Wendy W Chapman,
    • John N Dowling,
    • Atar Baer,
    • David L Buckeridge,
    • Dennis Cochrane,
    • Michael A Conway,
    • Peter Elkin,
    • Jeremy Espino,
    • Julia E Gunn,
    • Craig M Hales,
    • Lori Hutwagner,
    • Mikaela Keller,
    • Catherine Larson,
    • Rebecca Noe,
    • Anya Okhmatovskaia,
    • Karen Olson,
    • Marc Paladini,
    • Matthew Scholer,
    • Carol Sniegoski,
    • David Thompson,
    • Bill Lober
    JAMIA 2010;17:595-601 doi:10.1136/jamia.2010.003210

  • Migrating existing clinical content from ICD-9 to SNOMED

    • Prakash M Nadkarni,
    • Jonathan A Darer
    JAMIA 2010;17:602-607 doi:10.1136/jamia.2009.001057

  • Use of a codified medication process for documentation of home medications

    • David L Green,
    • Jan A Boonstra,
    • Marlene A Bober
    JAMIA 2010;17:608-612 doi:10.1136/jamia.2009.001453

  • Correction

    JAMIA 2010;17:612 doi:10.1136/jamia.2010.004440corr1

PostScript

  • Letter: Concerning SNOMED-CT content for public health case reports

    • Jeffrey R Wilcke,
    • Julie M Green,
    • Kent A Spackman,
    • Michael K Martin,
    • James T Case,
    • Suzanne L Santamaria,
    • Kurt Zimmerman
    JAMIA 2010;17:613 doi:10.1136/jamia.2010.003756

  • Letter: In response to letter to the editor: ‘Concerning SNOMED-CT content for public health case reports’

    • Deepthi Rajeev,
    • Catherine J Staes,
    • Scott R Evans,
    • Susan Mottice,
    • Robert Rolfs,
    • Matthew H Samore,
    • Jon Whitney,
    • Richard Kurzban,
    • Stanley M Huff
    JAMIA 2010;17:613-614 doi:10.1136/jamia.2010.005272

  • Letter: Note on Friedman's ‘fundamental theorem of biomedical informatics’

    • Subramani Mani
    JAMIA 2010;17:614 doi:10.1136/jamia.2010.003715

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